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1.
Rev. bras. oftalmol ; 82: e0041, 2023. tab, graf
Article in Portuguese | LILACS | ID: biblio-1507880

ABSTRACT

RESUMO A neuropatia óptica hereditária de Leber é uma doença mitocondrial hereditária neurodegenerativa. A taxa potencial de recuperação espontânea é controversa na literatura. A terapia genética tem sido estudada como suporte aos pacientes. O objetivo desta revisão foi avaliar qualitativamente a segurança, os efeitos adversos e a eficácia da terapia gênica disponível. Trata-se de uma revisão sistemática de artigos indexados nas bases de dados PubMed®, Biblioteca Virtual em Saúde, SciELO, Cochrane, ScienceDirect, Scopus e Lilacs no primeiro semestre de 2021. Os critérios de inclusão e filtros foram: artigos relacionados ao tema, estudos randomizados, ensaios clínicos, trabalhos em humanos, últimos 5 anos, nas línguas portuguesa, inglesa e espanhola e texto completo disponível gratuitamente. Os parâmetros de exclusão foram: artigos duplicados, fuga ao tema, artigos de revisão, trabalhos não disponíveis e que fugiam aos critérios de inclusão. O coeficiente de kappa foi 0,812. A terapia não apresentou efeitos adversos sérios em nenhum dos artigos selecionados, e os efeitos menores sofreram 100% de remissão espontânea após o tratamento. Apesar de NAbs terem sido encontrados no soro de alguns pacientes, não houve associação entre a resposta imune adaptativa e a injeção do vetor viral. O tratamento foi eficaz na melhora da acuidade e campo visual. Vários estudos confirmaram a eficácia da terapia gênica, em doses baixas e médias, na melhora da acuidade visual e também sobre os efeitos adversos comuns relacionados à altas doses. A resposta imune humoral e a variação dos NAbs no soro foi citada em mais de um artigo. A terapia foi eficaz na melhora da acuidade visual e os efeitos adversos que surgiram foram tratados facilmente. No entanto, a resposta imune humoral ainda precisa ser estudada.


ABSTRACT Leber's Hereditary Optic Neuropathy (LHON) is an inherited neurodegenerative mitochondrial disease. The potential rate of spontaneous recovery is controversial in the literature. Gene therapy has been studied to support patients. The objective of this review was to qualitatively assess the safety, adverse effects, and efficacy of available gene therapy. This is a systematic review of articles indexed in PubMed®, VHL, SciELO, Cochrane, ScienceDirect, Scopus, and Lilacs databases, in the first half of 2021. Inclusion criteria and filters were: articles related to the topic, randomized studies, clinical trials, work in humans, last 5 years, in Portuguese, English, and Spanish and full text available for free. The exclusion parameters were: duplicate articles, not related to the topic, review articles, not available works, and works that did not meet the inclusion criteria. The kappa coefficient was 0.812. The therapy had no serious adverse effects in any of the selected articles, and minor effects experienced 100% spontaneous remission after treatment. Although NAbs were found in the serum of some patients, there was no association between the adaptive immune response and the injection of the viral vector. The treatment was effective in improving acuity and visual field. Several studies have confirmed the effectiveness of gene therapy, at low and medium doses, in improving visual acuity and also on common adverse effects related to high doses. The humoral immune response and the variation in serum NAbs was cited in more than one article. The therapy was effective in improving visual acuity and the adverse effects that arose were easily treated. However, the humoral immune response still needs to be studied.


Subject(s)
Humans , Genetic Therapy/methods , Optic Atrophy, Hereditary, Leber/genetics , Optic Atrophy, Hereditary, Leber/therapy , Genetic Therapy/adverse effects , Adenoviridae , Treatment Outcome , Intravitreal Injections , NADH Dehydrogenase/genetics , NADH Dehydrogenase/therapeutic use
2.
Chinese Journal of Medical Genetics ; (6): 247-250, 2021.
Article in Chinese | WPRIM | ID: wpr-879563

ABSTRACT

OBJECTIVE@#To explore the genetic basis for a Chinese pedigree with suspected mitochondrial functional defects through combined next-generation sequencing (NGS), copy number variation sequencing (CNV-seq), and mitochondrial DNA (mtDNA) sequencing.@*METHODS@#Clinical data of the proband and his family members were collected. The patient and his parents were subjected to family-trio whole-exome sequencing (WES), CNV-seq and mtDNA variant detection. Candidate variant was verified by Sanger sequencing.@*RESULTS@#Trio-WES revealed that the proband has carried compound heterozygous variants of the NDUFS1 gene, including a paternally derived c.64C>T (p.R22X) nonsense variant and a maternally derived c.845A>G (p.N282S) missense variant. Both variants may cause loss of protein function. No variant that may cause the phenotype was identified by CNV-seq and mtDNA variant analysis.@*CONCLUSION@#Children with suspected mitochondrial disorders may have no specific syndromes or laboratory findings. A comprehensive strategy including mtDNA testing may facilitate the diagnosis and early clinical interventions.


Subject(s)
Child , Humans , China , DNA Copy Number Variations , Electron Transport , Mutation , NADH Dehydrogenase/genetics , Pedigree
3.
Journal of Forensic Medicine ; (6): 342-345, 2014.
Article in Chinese | WPRIM | ID: wpr-983927

ABSTRACT

OBJECTIVE@#To test droplet digital PCR for species identification and absolute quantification of biological sample.@*METHODS@#Specific primers and probes for human mtDNA encoding gene ND4 and 16S rRNA were designed, and the species-specificity was assessed on DNA samples derived from human and common animals. To determine the sensitivity and stability of droplet digital PCR for species identification and absolute quantification, gradient dilution series of recombinant plasmid and 16 human DNA samples were analyzed.@*RESULTS@#Human recombinant plasmid FAM (ND4) could be used in detecting the samples of human. And the results of detecting were consistent with all levels of diluted concentrations. Droplet digital PCR was able to detect low and single copy of target DNA.@*CONCLUSION@#Droplet digital PCR, with high sensitivity and specificity, is fully amenable for species identification and absolute quantification of biological samples, also it can be applied on routine forensic examination.


Subject(s)
Animals , Humans , DNA , DNA Primers/genetics , DNA, Mitochondrial/genetics , NADH Dehydrogenase/genetics , Polymerase Chain Reaction/methods , RNA, Ribosomal, 16S/genetics , Sensitivity and Specificity , Species Specificity
4.
Biomédica (Bogotá) ; 33(supl.1): 89-98, set. 2013. ilus, graf, mapas, tab
Article in Spanish | LILACS | ID: lil-695800

ABSTRACT

Introducción. Aedes aegypti es el principal vector del dengue en zonas urbanas. A pesar de su importancia epidemiológica, se desconoce la variabilidad genética de las poblaciones del vector en Colombia. Objetivo. Determinar la variabilidad genética del gen mitocondrial ND4 , que codifica para la subunidad 4 de la enzima NADH-deshidrogenasa, entre poblaciones de Ae. aegypti de los municipios de Sincelejo y Guaranda, donde se registra alta y baja incidencia de dengue, respectivamente. Materiales y métodos. A partir del material genético extraído de 36 hembras de Ae. aegypti , se determinó la secuencia parcial del gen mitocondrial ND4 y se estimaron los parámetros de diversidad de nucleótidos, diversidad haplotípica, estructura genética y flujo de genes entre las poblaciones de Sincelejo y Guaranda. También, se analizó la varianza molecular y se construyó una red haplotípica. Resultados. Se obtuvieron 36 secuencias de nucleótidos de 282 pb; éstas presentaron doce sitios polimórficos y se agruparon en diez haplotipos, dos presentes en ambas poblaciones, tres exclusivos de la población de Sincelejo y cinco de la población de Guaranda. Los estimadores de estructura genética ( F ST =0,15) y de flujo de genes ( Nm =1,40) evidencian diferenciación genética y un limitado intercambio de genes entre las poblaciones. Conclusión. Las poblaciones de Ae. aegypti de Sincelejo y Guaranda son genéticamente divergentes.


Introduction: Aedes aegypti is the principal vector of dengue in urban areas. Despite its epidemiological importance, the genetic variability of Colombian populations of this species is unknown. Objetive: To determine the genetic variability of mitocondrial gene ND4, which codes for subunit 4 of the enzyme NADH deshydrogenase, between populations of Ae. aegypti from municipalities of Sincelejo and Guaranda. The incidences of dengue reported from these two localities are high and low, respectively. Materials and methods: Genetic material extracted from 36 females of Ae. aegypti was used to determine the partial sequence of the mitocondrial gene ND4 as well as to estimate the parameters of nucleotidic and haplotypic diversities, genetic structure and gene flow between the Sincelejo and Guaranda populations. The molecular variance was also analysed and a haplotypic network constructed. Results: In all 36 nucleotide sequences of 282pb were obtained. These presented 12 polymorphic sites and could grouped into 10 haplotypes, two of them present in both populations, three exclusive to the Sincelejo population and five to that of Guaranda. The estimators of genetic structure ( F ST = 0.15) and gene flow ( Nm = 1.40) are both indicative of genetic differentiation and a limited exchange of genes between the populations. Conclusions: The Sincelejo and Guaranda populations of Ae. aegypti are genetically divergent.


Subject(s)
Animals , Female , Aedes/genetics , Dengue/epidemiology , Insect Vectors/genetics , Aedes/classification , Colombia/epidemiology , DNA, Mitochondrial/genetics , Dengue/transmission , Ecosystem , Gene Transfer, Horizontal , Genes, Insect , Genetic Variation , Haplotypes , Incidence , Insect Proteins/genetics , NADH Dehydrogenase/genetics , Polymorphism, Genetic , Sequence Analysis, DNA , Species Specificity , Urban Health
5.
Indian J Cancer ; 2013 July-Sept; 50(3): 206-213
Article in English | IMSEAR | ID: sea-148650

ABSTRACT

BACKGROUND: Mitochondrial DNA (Mt DNA) defects have been identified in a variety of Tumors, but the exact role of these defects in the pathogenicity and tumor progression is poorly understood. This study aims at identifying the status of mitochondrial OXPHOS genes in neoplastic transformation and attempts to establish a cause and effect relationship between mitochondrial OXPHOS defects and tumor progression. MATERIALS AND METHODS: Mutational, expression and functional analysis of l2 of the 13 mitochondrial OXPHOS genes has been carried out using PCR, Real-Time PCR and protein modeling in 180 sporadic samples of a heterogeneous group of benign and malignant tumors like that of benign, malignant, matched blood and adjacent normal tissue of breast and benign hemangioma. RESULTS: Mutations were identified in the ND4L, ND6 and COX-II regions of the mitochondrial OXPHOS genes. All the mutations were limited only to the malignant breast tissues. On relative quantification, a compromised expression of OXPHOS genes was identified in all the malignant tissues irrespective of their mutational states. Protein modeling revealed loss of function mutations of ND6 and COX-II proteins. CONCLUSION: This is the first study worldwide wherein a comparative study using different benign and malignant tumors has been carried out to assess the role of Mt DNA defects. Our data reveals mitochondrial dysfunction only in malignant cells and not in their benign counterparts, indicating that the dysfunction may arise after the pro-proliferative pathway has set in. We hypothesize that compromised OXPHOS may be a responsive mechanism of the cell to counter cancers, rather than a mechanism of initiating tumorigenesis.


Subject(s)
DNA Mutational Analysis , DNA, Mitochondrial/genetics , Electron Transport Complex IV/genetics , Genes, Mitochondrial/genetics , Humans , NADH Dehydrogenase/genetics , Neoplasms/genetics , Oxidative Phosphorylation , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction
6.
Mem. Inst. Oswaldo Cruz ; 108(supl.1): 3-10, 2013. tab, graf
Article in English | LILACS | ID: lil-697827

ABSTRACT

The increasing population of Aedes aegypti mosquitoes on Madeira Island (Portugal) resulted in the first autochthonous dengue outbreak, which occurred in October 2012. Our study establishes the first genetic evaluation based on the mitochondrial DNA (mtDNA) genes [cytochrome oxidase subunit I (COI) and NADH dehydrogenase subunit 4 (ND4)] and knockdown resistance ( kdr ) mutations exploring the colonisation history and the genetic diversity of this insular vector population. We included mosquito populations from Brazil and Venezuela in the analysis as putative geographic sources. The Ae. aegypti population from Madeira showed extremely low mtDNA genetic variability, with a single haplotype for COI and ND4. We also detected the presence of two important kdr mutations and the quasi-fixation of one of these mutations (F1534C). These results are consistent with a unique recent founder event that occurred on the island of Ae. aegypti mosquitoes that carry kdr mutations associated with insecticide resistance. Finally, we also report the presence of the F1534C kdr mutation in the Brazil and Venezuela populations. To our knowledge, this is the first time this mutation has been found in South American Ae. aegypti mosquitoes. Given the present risk of Ae. aegypti re-invading continental Europe from Madeira and the recent dengue outbreaks on the island, this information is important to plan surveillance and control measures.


Subject(s)
Animals , Aedes/genetics , Electron Transport Complex IV/genetics , Insect Vectors/genetics , Mutation/genetics , NADH Dehydrogenase/genetics , Animal Distribution , Brazil , Disease Outbreaks , DNA, Mitochondrial/genetics , Dengue/epidemiology , Haplotypes/genetics , Insecticide Resistance/genetics , Portugal/epidemiology , Venezuela
7.
The Korean Journal of Parasitology ; : 689-694, 2013.
Article in English | WPRIM | ID: wpr-197171

ABSTRACT

Opisthorchis viverrini and Clonorchis sinensis are parasites known to be carcinogenic and causative agents of cholangiocarcinoma in Asia. The standard method for diagnosis for those parasite infections is stool examination to detect parasite eggs. However, the method has low sensitivity, and eggs of O. viverrini and C. sinensis are difficult to distinguish from each other and from those of some other trematodes. Here, we report a multiplex real-time PCR coupled with high resolution melting (HRM) analysis for the differentiation of O. viverrini and C. sinensis eggs in fecal samples. Using 2 pairs of species-specific primers, DNA sequences from a portion of the mitochondrial NADH dehydrogenase subunit 2 (nad 2) gene, were amplified to generate 209 and 165 bp products for O. viverrini and C. sinensis, respectively. The distinct characteristics of HRM patterns were analyzed, and the melting temperatures peaked at 82.4+/-0.09degrees C and 85.9+/-0.08degrees C for O. viverrini and C. sinensis, respectively. This technique was able to detect as few as 1 egg of O. viverrini and 2 eggs of C. sinensis in a 150 mg fecal sample, which is equivalent to 7 and 14 eggs per gram of feces, respectively. The method is species-specific, rapid, simple, and does not require fluorescent probes or post-PCR processing for discrimination of eggs of the 2 species. It offers a new tool for differentiation and detection of Asian liver fluke infections in stool specimens.


Subject(s)
Animals , Humans , Asia , Clonorchis sinensis/classification , Feces/parasitology , Multiplex Polymerase Chain Reaction/methods , NADH Dehydrogenase/genetics , Opisthorchis/classification , Parasitology/methods , Real-Time Polymerase Chain Reaction/methods , Sensitivity and Specificity , Transition Temperature , Zygote
8.
Rev. Inst. Med. Trop. Säo Paulo ; 54(6): 325-329, Nov.-Dec. 2012. ilus
Article in English | LILACS, SES-SP | ID: lil-656268

ABSTRACT

Culex quinquefasciatus is a vector of human pathogens, including filarial nematodes and several viruses. Although its epidemiological relevance is known to vary across geographical regions, an understanding of its population genetic structure is still incipient. In light of this, we evaluated the genetic diversity of Cx. quinquefasciatus and Cx. pipiens x Cx. quinquefasciatus hybrids collected from nine localities in Brazil and one site in Argentina. We used mitochondrial genes cox1 and nd4, along with the coxA and wsp genes of the maternally-inherited Wolbachia endosymbiont. The nd4 fragment was invariant between samples, whilst cox1 exhibited four haplotypes that separated two types of Cx. quinquefasciatus, one clustered in southern Brazil. Low sequence diversity was generally observed, being discussed. Both Brazilian and Argentinian mosquitoes were infected with a single Wolbachia strain. As reported in previous studies with these populations, cox1 and nd4 diversity is not congruent with the population structure revealed by nuclear markers or alar morphology. Future Cx. quinquefasciatus research should, if possible, evaluate mtDNA diversity in light of other markers.


Culex quinquefasciatus é vetor de patógenos humanos, incluindo nematódeos filarídeos e vários vírus. Embora a sua relevância epidemiológica varie entre as diferentes regiões geográficas, o conhecimento da estrutura genética da população é ainda incipiente. Em vista disso, foram avaliados os níveis de diversidade genética de Cx. quinquefasciatus e de híbridos Cx. quinquefasciatus x Cx. pipiens de nove cidades do Brasil e em La Plata, na Argentina. Para os testes foram utilizados fragmentos dos genes mitocondriais cox1 e nd4, juntamente com coxA e wsp do endossimbionte Wolbachia, herdado maternalmente. O fragmento nd4 não apresentou variação entre as amostras, e o cox1 exibiu quatro haplótipos que separaram dois tipos de Cx. quinquefasciatus, com um deles agrupado no sul do Brasil. Os dados de sequência mostraram baixa diversidade, sendo esta discutida. Ambas as amostras de mosquitos brasileiros e argentinos estão infectados com uma única cepa de Wolbachia. A diversidade apresentada por nd4 e cox1 não é congruente com a estrutura da população revelada por marcadores nucleares e morfologia alar de estudos anteriores com estas mesmas populações. Pesquisas com Cx. quinquefasciatus devem, se possível, avaliar a diversidade por DNA mitocondrial na luz de outros marcadores.


Subject(s)
Animals , Culex/genetics , Culex/microbiology , Electron Transport Complex IV/genetics , Genetic Variation/genetics , NADH Dehydrogenase/genetics , Wolbachia , Argentina , Brazil , Genes, Insect/genetics , Genes, Mitochondrial/genetics
9.
Journal of Korean Medical Science ; : 180-184, 2010.
Article in English | WPRIM | ID: wpr-176235

ABSTRACT

We describe a Korean family presenting with pediatric-onset, progressive, generalized dystonia with bilateral striatal necrosis and the homoplasmic G14459A mutation in the mitochondrial ND6 gene. The G14459A mutation has been reported in families presenting with Leber hereditary optic neuropathy (LHON) alone, LHON plus dystonia, or pediatric-onset dystonia. The proband had shown dysarthria, progressive generalized dystonia, and spasticity at 5 yr. Brain MRI demonstrated bilateral striatal necrosis. Additional investigation of family members revealed the presence of homoplasmic G14459A mutation in asymptomatic individuals. The clinical manifestation of the homoplasmic G14459A mtDNA mutation within the same family showed asymptomatic or pediatric-onset dystonia, without optic neuropathy. This study reemphasizes that the G14459A mutation is a candidate mutation for maternally inherited dystonia, regardless of optic neuropathy, and supports the hypothesis that nuclear genes may play a role in modifying the clinical expression of mitochondrial disease.


Subject(s)
Adult , Female , Humans , Male , Asian People/genetics , Base Sequence , Brain/pathology , Dystonia/complications , Magnetic Resonance Imaging , Mitochondrial Diseases/complications , NADH Dehydrogenase/genetics , Necrosis , Optic Atrophy, Hereditary, Leber/genetics , Pedigree , Point Mutation , Republic of Korea
10.
J Environ Biol ; 2008 Jul; 29(4): 567-70
Article in English | IMSEAR | ID: sea-113825

ABSTRACT

Mitochondrial DNAs (mtDNAs) has been frequently used as genetic markers for the population genetic studies. In this study we used chum salmon (Oncorhynchus keta) from Korea, Japan andAmerica, and compared their mitochondrial NADH dehydrogenase subunit 3 (ND3) genes by DNA sequence analysis. Sequence variation was studied in the ND3 among total 11 individuals from three populations. The ND3 gene was amplified by PCR targeting parts of cytochrome oxidase III gene (COIII) and NADH dehydrogenase subunit 4L gene (ND4L). ND3 gene sequence, encoded 752 bps, presented some genetic variation in the chum salmon populations. The observed nucleotide variations inferred the distinct genetic differentiation of American salmons from Korean and Japanese chum salmons. Six sites of single nucleotide polymorphism (SNP) were explored in the ND3 locus. Denaturing gradient gel electrophoresis analysis also showed a clear heterogenous band in American salmons compared to Asian salmons.


Subject(s)
Animals , Base Sequence , DNA, Mitochondrial/genetics , Electrophoresis , Genetic Variation , Genetics, Population , Korea , NADH Dehydrogenase/genetics , Oncorhynchus keta/genetics , Phylogeny , Polymerase Chain Reaction , Polymorphism, Single Nucleotide/genetics , Sequence Analysis, DNA , Species Specificity
11.
Mem. Inst. Oswaldo Cruz ; 102(5): 573-580, Aug. 2007. tab, graf, ilus
Article in English | LILACS, SES-SP | ID: lil-458624

ABSTRACT

To analyze the genetic relatedness and phylogeographic structure of Aedes aegypti, we collected samples from 36 localities throughout the Americas (Brazil, Peru, Venezuela, Guatemala, US), three from Africa (Guinea, Senegal, Uganda), and three from Asia (Singapore, Cambodia, Tahiti). Amplification and sequencing of a fragment of the mitochondrial NADH dehydrogenase subunit 4 gene identified 20 distinct haplotypes, of which 14 are exclusive to the Americas, four to African/Asian countries, one is common to the Americas and Africa, and one to the Americas and Asia. Nested clade analysis (NCA), pairwise distribution, statistical parsimony, and maximum parsimony analyses were used to infer evolutionary and historic processes, and to estimate phylogenetic relationships among haplotypes. Two clusters were found in all the analyses. Haplotypes clustered in the two clades were separated by eight mutational steps. Phylogeographic structure detected by the NCA was consistent with distant colonization within one clade and fragmentation followed by range expansion via long distance dispersal in the other. Three percent of nucleotide divergence between these two clades is suggestive of a gene pool division that may support the hypothesis of occurrence of two subspecies of Ae. aegypti in the Americas.


Subject(s)
Animals , Genetic Variation , Aedes/genetics , DNA, Mitochondrial/genetics , Genetics, Population , Insect Vectors/genetics , NADH Dehydrogenase/genetics , Aedes/enzymology , Africa , Americas , Asia , Haplotypes/genetics , Insect Vectors/enzymology , Polymerase Chain Reaction
12.
Mem. Inst. Oswaldo Cruz ; 102(1): 59-61, Feb. 2007. tab
Article in English | LILACS | ID: lil-440635

ABSTRACT

Resistance in Mycobacterium tuberculosis to isoniazid (INH) is caused by mutations in the catalase-peroxidase gene (katG) , and within the inhA promoter and/or in structural gene. A small percentage (~ 10 percent) of INH-resistant strains do not present mutations in both of these loci. Other genes have been associated with INH resistance including the gene encoding for NADH dehydrogenase (ndh) . Here we report the detection of two ndh locus mutations (CGT to TGT change in codon 13 and GTG to GCG change in codon 18) by analyzing 23 INH-resistant and in none of 13 susceptible isolates from Brazilian tuberculosis patients. We also detected two isolates without a mutation in ndh, or any of the other INH resistance-associated loci examined, suggesting the existence of additional, as yet to be described, INH resistance mechanisms.


Subject(s)
Humans , Antitubercular Agents/pharmacology , Isoniazid/pharmacology , Mutation/genetics , Mycobacterium tuberculosis/drug effects , Mycobacterium tuberculosis/genetics , NADH Dehydrogenase/genetics , Brazil , Drug Resistance, Bacterial/genetics , Microbial Sensitivity Tests , Mycobacterium tuberculosis/isolation & purification , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational
13.
Mem. Inst. Oswaldo Cruz ; 101(6): 625-633, Sept. 2006. mapas, tab
Article in English | LILACS | ID: lil-437055

ABSTRACT

The mosquito Aedes aegypti is the main vector of dengue in Venezuela. The genetic structure of this vector was investigated in 24 samples collected from eight geographic regions separated by up to 1160 km. We examined the distribution of a 359-basepair region of the NADH dehydrogenase subunit 4 mitochondrial gene among 1144 Ae. aegypti from eight collections. This gene was amplified by the polymerase chain reaction and tested for variation using single strand conformation polymorphism analysis. Seven haplotypes were detected throughout Venezuela and these were sorted into two clades. Significant differentiation was detected among collections and these were genetically isolated by distance.


Subject(s)
Animals , Aedes/genetics , DNA, Mitochondrial/genetics , Genetic Variation , Insect Vectors/genetics , NADH Dehydrogenase/genetics , Aedes/enzymology , Dengue/transmission , Geography , Haplotypes/genetics , Insect Vectors/enzymology , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational , Venezuela
14.
J Genet ; 2006 Aug; 85(2): 107-16
Article in English | IMSEAR | ID: sea-114521

ABSTRACT

Using oligonucleotide primers designed to match hypervariable segments I (HVS-1) of Panthera tigris mitochondrial DNA (mtDNA), we amplified two different PCR products (500 bp and 287 bp) in the tiger (Panthera tigris), but got only one PCR product (287 bp) in the leopard (Panthera pardus). Sequence analyses indicated that the sequence of 287 bp was a D-loop-like nuclear mitochondrial sequence (Numts), indicating a nuclear transfer that occurred approximately 4.8-17 million years ago in the tiger and 4.6-16 million years ago in the leopard. Although the mtDNA D-loop sequence has a rapid rate of evolution, the 287-bp Numts are highly conserved; they are nearly identical in tiger subspecies and only 1.742% different between tiger and leopard. Thus, such sequences represent molecular 'fossils' that can shed light on evolution of the mitochondrial genome and may be the most appropriate outgroup for phylogenetic analysis. This is also proved by comparing the phylogenetic trees reconstructed using the D-loop sequence of snow leopard and the 287-bp Numts as outgroup.


Subject(s)
Animals , Base Sequence , Cell Nucleus/genetics , Complementarity Determining Regions , Conserved Sequence , DNA, Mitochondrial/chemistry , Evolution, Molecular , Genetic Variation , Mitochondria/genetics , Molecular Sequence Data , NADH Dehydrogenase/genetics , Phylogeny , Sequence Alignment , Tigers/classification
15.
Braz. j. med. biol. res ; 39(6): 725-730, June 2006. tab
Article in English | LILACS | ID: lil-428272

ABSTRACT

Leber's hereditary optic neuropathy (LHON) is a maternally inherited form of retinal ganglion cell degeneration leading to optic atrophy in young adults. Several mutations in different genes can cause LHON (heterogeneity). The ND6 gene is one of the mitochondrial genes that encodes subunit 6 of complex I of the respiratory chain. This gene is a hot spot gene. Fourteen Persian LHON patients were analyzed with single-strand conformational polymorphism and DNA sequencing techniques. None of these patients had four primary mutations, G3460A, G11788A, T14484C, and G14459A, related to this disease. We identified twelve nucleotide substitutions, G13702C, T13879C, T14110C, C14167T, G14199T, A14233G, G14272C, A14290G, G14365C, G14368C, T14766C, and T14798C. Eleven of twelve nucleotide substitutions had already been reported as polymorphism. One of the nucleotide substitutions (A14290G) has not been reported. The A14290G nucleotide substitution does not change its amino acid (glutamic acid). We looked for base conservation using DNA star software (MEGALIGN program) as a criterion for pathogenic or nonpathogenic nucleotide substitution in A14290G. The results of ND6 gene alignment in humans and in other species (mouse, cow, elegans worm, and Neurospora crassa mold) revealed that the 14290th base was not conserved. Fifty normal controls were also investigated for this polymorphism in the Iranian population and two had A14290G polymorphism (4 percent). This study provides evidence that the mtDNA A14290G allele is a new nonpathogenic polymorphism. We suggest follow-up studies regarding this polymorphism in different populations.


Subject(s)
Humans , DNA, Mitochondrial/genetics , NADH Dehydrogenase/genetics , Optic Atrophy, Hereditary, Leber/genetics , Polymorphism, Genetic/genetics , Alleles , Case-Control Studies , DNA Mutational Analysis , Polymorphism, Single-Stranded Conformational , Sequence Analysis, DNA
16.
Indian J Ophthalmol ; 2005 Sep; 53(3): 167-71
Article in English | IMSEAR | ID: sea-70720

ABSTRACT

PURPOSE: Leber's hereditary optic neuropathy (LHON) presents in early adulthood with painless progressive blindness of one or both eyes. Usually there is a positive family history of similar disease on the maternal side. Definitive diagnosis can be established by finding the change in the mitochondrial gene. No molecular studies have been reported from India. MATERIAL AND METHODS: Clinical, ophthalmologic and molecular studies were carried out in two patients from different families and available first degree relatives. The subjects were tested for the three common mutations seen in LHON by molecular techniques of polymerase chain reaction using mutation specific primers. RESULTS: The mutations G3460A and G11778A in the mitochondrial genes MTND1 and MTND4, known to be causative for LHON, were found in one family each. CONCLUSION: Diagnosis of LHON should be considered in familial cases and in young adults with optic atrophy. Confirmation of diagnosis should be sought by molecular gene analysis. Genetic counselling should be offered to all 'at risk' relatives of a patient harbouring the mutation.


Subject(s)
Adolescent , DNA, Mitochondrial/genetics , Humans , India , Male , Mutation , NADH Dehydrogenase/genetics , Optic Atrophy, Hereditary, Leber/diagnosis , Pedigree , Polymerase Chain Reaction
17.
Article in English | IMSEAR | ID: sea-37949

ABSTRACT

To examine an association between the mitochondrial DNA (mt5178) genotype and various cancers, we genotyped 1120 non-cancer controls and 930 cancer cases including esophageal, stomach, colorectal, lung, breast and malignant lymphoma in a sample of Japanese patients. The mt5178A/C was genotyped by the polymerase chain reaction with confronting two-pair primers (PCR-CTPP). The frequency of mt5178A/C within the non-cancer and cancer groups, and age distribution of subjects with mt5178A and C were investigated. Odd ratios (ORs) of the mt5178A and C genotypes were also examined. The frequency of mt5178A was 39.1% in non-cancer subjects while frequencies in those having cancer included 39.0% in breast, 37.4% in colorectal, 45.1% in esophageal, 38.0% in lung, 41.5% in malignant lymphoma, and 38.8% in stomach cancer. There was no significant difference in the frequency of the mt5178 genotype among the six types of cancer studied. There was also no significant difference in the frequency of the mt5178 genotype between non-cancer and cancer subjects regardless of total age with the exception that ages 40-49 years (the frequency of the mt5178A was higher in cancer subjects). There was a significant interaction term between age and the mt5178 genotype in older (age>=60) lung cancer patients. The cumulative frequency of mt5178C increased more markedly than that of mt5178A after age 40 in non-cancer subjects, and after age 50 in cancer subjects ORs of the genotype were not significant for all cancers combined or for any individual site of cancer. In the present study, the mt5178 genotype seems to have no association with any of the cancers examined here. But an interaction term between the mt5178 genotype and aging on cancer was suggested with the Japanese population under study.


Subject(s)
Adult , Aged , Aged, 80 and over , Amino Acid Substitution , DNA, Mitochondrial/genetics , Genotype , Humans , Middle Aged , NADH Dehydrogenase/genetics , Neoplasms/genetics , Polymorphism, Genetic
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